HL_8VVP_115

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGCGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_115 not in the Motif Atlas

Geometric match to HL_2Z75_004

Geometric discrepancy: 0.0684

The information below is about HL_2Z75_004

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVP|1|ZA|A|1353
8VVP|1|ZA|G|1354
8VVP|1|ZA|C|1355
8VVP|1|ZA|G|1356
8VVP|1|ZA|A|1357
8VVP|1|ZA|U|1358

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain AB

RPSA

Chain CB

S2-like