HL_8VVP_117

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CCCCGAGCG

Length

9 nucleotides

Bulged bases

8VVP|1|ZA|C|1418, 8VVP|1|ZA|C|1419, 8VVP|1|ZA|A|1421, 8VVP|1|ZA|C|1423

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_117 not in the Motif Atlas

Geometric match to HL_5J7L_200

Geometric discrepancy: 0.2982

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8VVP|1|ZA|C|1416
8VVP|1|ZA|C|1417
8VVP|1|ZA|C|1418
8VVP|1|ZA|C|1419
8VVP|1|ZA|G|1420
8VVP|1|ZA|A|1421
8VVP|1|ZA|G|1422
8VVP|1|ZA|C|1423
8VVP|1|ZA|G|1424

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain QB

uS9

Chain TB

S19