HL_8VVP_122

3D structure

PDB id

8VVP (explore in PDB, NAKB, or RNA 3D Hub)

Description

Codon sampling state obtained from Anisomycin-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVP_122 not in the Motif Atlas

Geometric match to HL_8CRE_225

Geometric discrepancy: 0.0821

The information below is about HL_8CRE_225

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVP|1|ZA|G|1847
8VVP|1|ZA|U|1848
8VVP|1|ZA|G|1849
8VVP|1|ZA|A|1850
8VVP|1|ZA|A|1851
8VVP|1|ZA|C|1852

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain MA

eL41

Chain WA

Large subunit ribosomal RNA; LSU rRNA