HL_8VVS_004

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAGCUGAUAG

Length

10 nucleotides

Bulged bases

8VVS|1|TA|C|16, 8VVS|1|TA|U|17, 8VVS|1|TA|G|18, 8VVS|1|TA|A|19, 8VVS|1|TA|U|20, 8VVS|1|TA|A|21

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_004 not in the Motif Atlas

Geometric match to HL_7UQ6_001

Geometric discrepancy: 0.2501

The information below is about HL_7UQ6_001

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20490.1

Basepair signature

cWW-cWS-F

Number of instances in this motif group

13

Unit IDs

8VVS|1|TA|C|13
8VVS|1|TA|A|14
8VVS|1|TA|G|15
8VVS|1|TA|C|16
8VVS|1|TA|U|17
8VVS|1|TA|G|18
8VVS|1|TA|A|19
8VVS|1|TA|U|20
8VVS|1|TA|A|21
8VVS|1|TA|G|22

Current chains

Chain TA

E-site tRNA

Nearby chains