HL_8VVS_009

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUCGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_009 not in the Motif Atlas

Geometric match to HL_6NWY_035

Geometric discrepancy: 0.35

The information below is about HL_6NWY_035

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8VVS|1|UA|G|53
8VVS|1|UA|U|54
8VVS|1|UA|U|55
8VVS|1|UA|C|56
8VVS|1|UA|G|57
8VVS|1|UA|A|58
8VVS|1|UA|A|59
8VVS|1|UA|A|60
8VVS|1|UA|C|61

Current chains

Chain UA

A-site tRNA

Nearby chains

Chain HC

eukaryotic elongation factor 1 A

Chain LA

eL40

Chain WA

Large subunit ribosomal RNA; LSU rRNA