HL_8VVS_011

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UAACCA

Length

6 nucleotides

Bulged bases

8VVS|1|WA|C|72

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_011 not in the Motif Atlas

Geometric match to HL_8P9A_114

Geometric discrepancy: 0.1769

The information below is about HL_8P9A_114

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51020.2

Basepair signature

cWW-cSW-F

Number of instances in this motif group

14

Unit IDs

8VVS|1|WA|U|68
8VVS|1|WA|A|69
8VVS|1|WA|A|70
8VVS|1|WA|C|71
8VVS|1|WA|C|72
8VVS|1|WA|A|73

Current chains

Chain WA

28S rRNA

Nearby chains

Chain HA

L36

Chain K

eL13

Chain M

eL15

Chain Z

uL15