HL_8VVS_012

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGGCGAG

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_012 not in the Motif Atlas

Geometric match to HL_8CRE_003

Geometric discrepancy: 0.0917

The information below is about HL_8CRE_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37369.2

Basepair signature

cWW-tSH-F-F-F

Number of instances in this motif group

9

Unit IDs

8VVS|1|WA|C|89
8VVS|1|WA|G|90
8VVS|1|WA|G|91
8VVS|1|WA|C|92
8VVS|1|WA|G|93
8VVS|1|WA|A|94
8VVS|1|WA|G|95

Current chains

Chain WA

28S rRNA

Nearby chains

Chain K

eL13

Chain NA

eL42

Chain P

eL18

Chain TA

Transfer RNA; tRNA

Chain Z

uL15