HL_8VVS_013

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGCGGCGG

Length

8 nucleotides

Bulged bases

8VVS|1|WA|G|132, 8VVS|1|WA|C|133, 8VVS|1|WA|G|134, 8VVS|1|WA|G|135, 8VVS|1|WA|C|136

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8VVS|1|WA|C|131
8VVS|1|WA|G|132
8VVS|1|WA|C|133
8VVS|1|WA|G|134
8VVS|1|WA|G|135
8VVS|1|WA|C|136
8VVS|1|WA|G|137
8VVS|1|WA|G|138

Current chains

Chain WA

28S rRNA

Nearby chains

Chain GA

L35

Chain IA

L37

Chain M

eL15

Chain YA

5.8S ribosomal RNA; 5.8S rRNA