HL_8VVS_016

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUGAGGC

Length

9 nucleotides

Bulged bases

8VVS|1|WA|G|232

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_016 not in the Motif Atlas

Homologous match to HL_8GLP_007

Geometric discrepancy: 0.1387

The information below is about HL_8GLP_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_27670.7

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

18

Unit IDs

8VVS|1|WA|G|230
8VVS|1|WA|U|231
8VVS|1|WA|G|232
8VVS|1|WA|U|233
8VVS|1|WA|G|234
8VVS|1|WA|A|235
8VVS|1|WA|G|236
8VVS|1|WA|G|237
8VVS|1|WA|C|238

Current chains

Chain WA

28S rRNA

Nearby chains

Chain C

uL4

Chain X

L26

Chain YA

5.8S ribosomal RNA; 5.8S rRNA