HL_8VVS_035

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

8VVS|1|WA|G|1871

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_035 not in the Motif Atlas

Geometric match to HL_8P9A_137

Geometric discrepancy: 0.0885

The information below is about HL_8P9A_137

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVS|1|WA|G|1866
8VVS|1|WA|G|1867
8VVS|1|WA|U|1868
8VVS|1|WA|A|1869
8VVS|1|WA|A|1870
8VVS|1|WA|G|1871
8VVS|1|WA|C|1872

Current chains

Chain WA

28S rRNA

Nearby chains

Chain I

L10