HL_8VVS_038

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGUAACAA

Length

8 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_038 not in the Motif Atlas

Geometric match to HL_8CRE_027

Geometric discrepancy: 0.2127

The information below is about HL_8CRE_027

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8VVS|1|WA|U|2008
8VVS|1|WA|G|2009
8VVS|1|WA|U|2010
8VVS|1|WA|A|2011
8VVS|1|WA|A|2012
8VVS|1|WA|C|2013
8VVS|1|WA|A|2014
8VVS|1|WA|A|2015

Current chains

Chain WA

28S rRNA

Nearby chains

Chain LA

eL40