HL_8VVS_051

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCUUG

Length

5 nucleotides

Bulged bases

8VVS|1|WA|C|2741, 8VVS|1|WA|U|2742

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_051 not in the Motif Atlas

Geometric match to HL_7A0S_017

Geometric discrepancy: 0.0875

The information below is about HL_7A0S_017

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_90436.3

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8VVS|1|WA|C|2740
8VVS|1|WA|C|2741
8VVS|1|WA|U|2742
8VVS|1|WA|U|2743
8VVS|1|WA|G|2744

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain OA

eL43