HL_8VVS_062

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8VVS|1|WA|A|3878, 8VVS|1|WA|A|3879, 8VVS|1|WA|C|3880

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_062 not in the Motif Atlas

Geometric match to HL_8CRE_049

Geometric discrepancy: 0.0947

The information below is about HL_8CRE_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61996.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8VVS|1|WA|G|3875
8VVS|1|WA|G|3876
8VVS|1|WA|G|3877
8VVS|1|WA|A|3878
8VVS|1|WA|A|3879
8VVS|1|WA|C|3880
8VVS|1|WA|G|3881
8VVS|1|WA|G|3882
8VVS|1|WA|G|3883
8VVS|1|WA|C|3884

Current chains

Chain WA

28S rRNA

Nearby chains

Chain B

uL3

Chain DA

L32