HL_8VVS_067

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UCAAACGGUAACG

Length

13 nucleotides

Bulged bases

8VVS|1|WA|A|4216, 8VVS|1|WA|C|4223

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_067 not in the Motif Atlas

Geometric match to HL_4WF9_050

Geometric discrepancy: 0.1345

The information below is about HL_4WF9_050

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_02042.1

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

12

Unit IDs

8VVS|1|WA|U|4212
8VVS|1|WA|C|4213
8VVS|1|WA|A|4214
8VVS|1|WA|A|4215
8VVS|1|WA|A|4216
8VVS|1|WA|C|4217
8VVS|1|WA|G|4218
8VVS|1|WA|G|4219
8VVS|1|WA|U|4220
8VVS|1|WA|A|4221
8VVS|1|WA|A|4222
8VVS|1|WA|C|4223
8VVS|1|WA|G|4224

Current chains

Chain WA

28S rRNA

Nearby chains

Chain AA

L29

Chain I

L10

Chain S

eL21