HL_8VVS_076

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_076 not in the Motif Atlas

Geometric match to HL_7A0S_062

Geometric discrepancy: 0.0935

The information below is about HL_7A0S_062

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVS|1|WA|C|4542
8VVS|1|WA|G|4543
8VVS|1|WA|U|4544
8VVS|1|WA|G|4545
8VVS|1|WA|A|4546
8VVS|1|WA|G|4547

Current chains

Chain WA

28S rRNA

Nearby chains

Chain A

uL2

Chain SA

Transfer RNA; tRNA