HL_8VVS_079

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8VVS|1|WA|G|4696, 8VVS|1|WA|C|4700

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_079 not in the Motif Atlas

Geometric match to HL_8CRE_066

Geometric discrepancy: 0.1084

The information below is about HL_8CRE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8VVS|1|WA|C|4690
8VVS|1|WA|U|4691
8VVS|1|WA|G|4692
8VVS|1|WA|A|4693
8VVS|1|WA|A|4694
8VVS|1|WA|C|4695
8VVS|1|WA|G|4696
8VVS|1|WA|C|4697
8VVS|1|WA|C|4698
8VVS|1|WA|U|4699
8VVS|1|WA|C|4700
8VVS|1|WA|U|4701
8VVS|1|WA|A|4702
8VVS|1|WA|A|4703
8VVS|1|WA|G|4704

Current chains

Chain WA

28S rRNA

Nearby chains

Chain H

L9

Chain LA

eL40

Chain N

uL13