HL_8VVS_089

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CACUUG

Length

6 nucleotides

Bulged bases

8VVS|1|YA|U|110, 8VVS|1|YA|U|111

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_089 not in the Motif Atlas

Geometric match to HL_7VTI_001

Geometric discrepancy: 0.1659

The information below is about HL_7VTI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89167.2

Basepair signature

cWW-F-F

Number of instances in this motif group

22

Unit IDs

8VVS|1|YA|C|107
8VVS|1|YA|A|108
8VVS|1|YA|C|109
8VVS|1|YA|U|110
8VVS|1|YA|U|111
8VVS|1|YA|G|112

Current chains

Chain YA

5.8S rRNA

Nearby chains

Chain IA

L37

Chain KA

eL39

Chain W

uL23

Chain WA

Large subunit ribosomal RNA; LSU rRNA