HL_8VVS_093

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAAUUC

Length

7 nucleotides

Bulged bases

8VVS|1|ZA|U|160, 8VVS|1|ZA|U|161

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_093 not in the Motif Atlas

Geometric match to HL_8CRE_193

Geometric discrepancy: 0.1435

The information below is about HL_8CRE_193

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VVS|1|ZA|G|156
8VVS|1|ZA|U|157
8VVS|1|ZA|A|158
8VVS|1|ZA|A|159
8VVS|1|ZA|U|160
8VVS|1|ZA|U|161
8VVS|1|ZA|C|162

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain GB

eS6

Chain YB

S24