HL_8VVS_116

3D structure

PDB id

8VVS (explore in PDB, NAKB, or RNA 3D Hub)

Description

Post-decoding post-hydrolysis state obtained from merged datasets of elongation inhibitor-treated mammalian ribosomes

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUUC

Length

8 nucleotides

Bulged bases

8VVS|1|ZA|U|1371

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VVS_116 not in the Motif Atlas

Geometric match to HL_8CRE_219

Geometric discrepancy: 0.094

The information below is about HL_8CRE_219

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_63894.2

Basepair signature

cWW-cWW-F-F-F

Number of instances in this motif group

19

Unit IDs

8VVS|1|ZA|G|1366
8VVS|1|ZA|U|1367
8VVS|1|ZA|U|1368
8VVS|1|ZA|A|1369
8VVS|1|ZA|A|1370
8VVS|1|ZA|U|1371
8VVS|1|ZA|U|1372
8VVS|1|ZA|C|1373

Current chains

Chain ZA

18S rRNA

Nearby chains

Chain RB

eS17