HL_8VWQ_009

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

8VWQ|1|1|A|311

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VWQ_009 not in the Motif Atlas

Geometric match to HL_5J7L_142

Geometric discrepancy: 0.1188

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8VWQ|1|1|C|305
8VWQ|1|1|U|306
8VWQ|1|1|G|307
8VWQ|1|1|G|308
8VWQ|1|1|A|309
8VWQ|1|1|A|310
8VWQ|1|1|A|311
8VWQ|1|1|G|312

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L24