HL_8VWQ_033

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

8VWQ|1|1|U|1396, 8VWQ|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VWQ_033 not in the Motif Atlas

Geometric match to HL_5J7L_168

Geometric discrepancy: 0.0986

The information below is about HL_5J7L_168

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81545.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8VWQ|1|1|G|1389
8VWQ|1|1|U|1390
8VWQ|1|1|U|1391
8VWQ|1|1|A|1392
8VWQ|1|1|A|1393
8VWQ|1|1|U|1394
8VWQ|1|1|A|1395
8VWQ|1|1|U|1396
8VWQ|1|1|U|1397
8VWQ|1|1|C|1398

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23