HL_8VWQ_060

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VWQ_060 not in the Motif Atlas

Geometric match to HL_4V9F_065

Geometric discrepancy: 0.0741

The information below is about HL_4V9F_065

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8VWQ|1|1|C|2594
8VWQ|1|1|G|2595
8VWQ|1|1|U|2596
8VWQ|1|1|G|2597
8VWQ|1|1|A|2598
8VWQ|1|1|G|2599

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 5

Transfer RNA; tRNA

Chain 6

Elongation factor P

Chain B

50S ribosomal protein L2