HL_8VWQ_065

3D structure

PDB id

8VWQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGACGAC

Length

9 nucleotides

Bulged bases

8VWQ|1|1|A|2820

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8VWQ_065 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.0606

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8VWQ|1|1|G|2819
8VWQ|1|1|A|2820
8VWQ|1|1|A|2821
8VWQ|1|1|G|2822
8VWQ|1|1|A|2823
8VWQ|1|1|C|2824
8VWQ|1|1|G|2825
8VWQ|1|1|A|2826
8VWQ|1|1|C|2827

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain C

50S ribosomal protein L3

Chain N

Large ribosomal subunit protein bL17