HL_8VWQ_102
3D structure
- PDB id
- 8VWQ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the closed conformation)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUGGGGUG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8VWQ_102 not in the Motif Atlas
- Geometric match to HL_9DFC_104
- Geometric discrepancy: 0.1076
- The information below is about HL_9DFC_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8VWQ|1|5|C|31
8VWQ|1|5|A|32
8VWQ|1|5|U|33
8VWQ|1|5|G|34
8VWQ|1|5|G|35
8VWQ|1|5|G|36
8VWQ|1|5|G|37
8VWQ|1|5|U|38
8VWQ|1|5|G|39
Current chains
- Chain 5
- tRNA^ProL (GGG)
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- messenger RNA
- Chain 6
- Elongation factor P
- Chain n
- Small ribosomal subunit protein uS9
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