HL_8W2N_044

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

8W2N|1|1|A|1808

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W2N_044 not in the Motif Atlas

Geometric match to HL_3OXE_002

Geometric discrepancy: 0.0838

The information below is about HL_3OXE_002

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_37569.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8W2N|1|1|C|1806
8W2N|1|1|G|1807
8W2N|1|1|A|1808
8W2N|1|1|A|1809
8W2N|1|1|A|1810
8W2N|1|1|G|1811

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain B

50S ribosomal protein L2

Chain X

50S ribosomal protein L28