HL_8W2N_067

3D structure

PDB id

8W2N (explore in PDB, NAKB, or RNA 3D Hub)

Description

E. coli 70S ribosome with unmodified Lys-tRNAPro(GGG) in the P/P conformation on a slippery CCC-C codon and Elongation Factor P bound (uL1 in the open conformation)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

UUUGAUCAUGG

Length

11 nucleotides

Bulged bases

8W2N|1|2|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W2N_067 not in the Motif Atlas

Geometric match to HL_5J7L_001

Geometric discrepancy: 0.0642

The information below is about HL_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_89881.5

Basepair signature

cWW-tHW-F-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8W2N|1|2|U|12
8W2N|1|2|U|13
8W2N|1|2|U|14
8W2N|1|2|G|15
8W2N|1|2|A|16
8W2N|1|2|U|17
8W2N|1|2|C|18
8W2N|1|2|A|19
8W2N|1|2|U|20
8W2N|1|2|G|21
8W2N|1|2|G|22

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain j

30S ribosomal protein S5

Chain q

30S ribosomal protein S12