HL_8W51_028

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8W51|1|A|A|1070

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W51_028 not in the Motif Atlas

Homologous match to HL_5J7L_161

Geometric discrepancy: 0.5415

The information below is about HL_5J7L_161

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19210.3

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8W51|1|A|C|1064
8W51|1|A|U|1065
8W51|1|A|U|1066
8W51|1|A|A|1067
8W51|1|A|G|1068
8W51|1|A|A|1069
8W51|1|A|A|1070
8W51|1|A|G|1071
8W51|1|A|C|1072
8W51|1|A|A|1073
8W51|1|A|G|1074

Current chains

Chain A

23S rRNA

Nearby chains

Chain J

Large ribosomal subunit protein uL11