HL_8W51_036

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8W51|1|A|A|1453, 8W51|1|A|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W51_036 not in the Motif Atlas

Geometric match to HL_4V88_192

Geometric discrepancy: 0.125

The information below is about HL_4V88_192

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_43793.1

Basepair signature

cWW-F

Number of instances in this motif group

50

Unit IDs

8W51|1|A|C|1451
8W51|1|A|G|1452
8W51|1|A|A|1453
8W51|1|A|C|1454
8W51|1|A|G|1455
8W51|1|A|G|1456
8W51|1|A|U|1457
8W51|1|A|U|1458
8W51|1|A|G|1459

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L17