HL_8W51_050

3D structure

PDB id

8W51 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of YchF(H114A) on E.coli 50S ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

8W51|1|A|A|2030, 8W51|1|A|A|2031, 8W51|1|A|G|2032

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8W51_050 not in the Motif Atlas

Homologous match to HL_8VTW_049

Geometric discrepancy: 0.1206

The information below is about HL_8VTW_049

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8W51|1|A|G|2027
8W51|1|A|U|2028
8W51|1|A|G|2029
8W51|1|A|A|2030
8W51|1|A|A|2031
8W51|1|A|G|2032
8W51|1|A|A|2033
8W51|1|A|U|2034
8W51|1|A|G|2035
8W51|1|A|C|2036

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L32

Chain D

50S ribosomal protein L3

Chain S

50S ribosomal protein L21