HL_8WHX_011

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

8WHX|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_011 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1393

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8WHX|1|A|U|387
8WHX|1|A|U|388
8WHX|1|A|G|389
8WHX|1|A|G|390
8WHX|1|A|G|391
8WHX|1|A|A|392
8WHX|1|A|U|393
8WHX|1|A|G|394

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L24