HL_8WHX_037

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

8WHX|1|A|U|1511, 8WHX|1|A|U|1512

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_037 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.0959

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8WHX|1|A|G|1504
8WHX|1|A|U|1505
8WHX|1|A|U|1506
8WHX|1|A|G|1507
8WHX|1|A|A|1508
8WHX|1|A|U|1509
8WHX|1|A|A|1510
8WHX|1|A|U|1511
8WHX|1|A|U|1512
8WHX|1|A|C|1513

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23