HL_8WHX_056

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8WHX|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_056 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.2379

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8WHX|1|A|C|2472
8WHX|1|A|U|2473
8WHX|1|A|G|2474
8WHX|1|A|G|2475
8WHX|1|A|G|2476
8WHX|1|A|G|2477
8WHX|1|A|C|2478
8WHX|1|A|G|2479
8WHX|1|A|G|2480

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L27