HL_8WHX_059

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

UGUAAGUG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_059 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1215

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8WHX|1|A|U|2548
8WHX|1|A|G|2549
8WHX|1|A|U|2550
8WHX|1|A|A|2551
8WHX|1|A|A|2552
8WHX|1|A|G|2553
8WHX|1|A|U|2554
8WHX|1|A|G|2555

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L27