HL_8WHX_088

3D structure

PDB id

8WHX (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

GCUUAAC

Length

7 nucleotides

Bulged bases

8WHX|1|a|U|599

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WHX_088 not in the Motif Atlas

Homologous match to HL_4LFB_014

Geometric discrepancy: 0.1024

The information below is about HL_4LFB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_10453.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8WHX|1|a|G|597
8WHX|1|a|C|598
8WHX|1|a|U|599
8WHX|1|a|U|600
8WHX|1|a|A|601
8WHX|1|a|A|602
8WHX|1|a|C|603

Current chains

Chain a

16S rRNA

Nearby chains

Chain e

30S ribosomal protein S4

Chain q

30S ribosomal protein S16