3D structure

PDB id
8WHX (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 70S ribosome and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
2.8 Å

Loop

Sequence
CUGCAACUCG
Length
10 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8WHX_103 not in the Motif Atlas
Homologous match to HL_4LFB_029
Geometric discrepancy: 0.1029
The information below is about HL_4LFB_029
Detailed Annotation
T-loop with 3 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_93658.1
Basepair signature
cWW-tWH-F-F-F-F-F-F
Number of instances in this motif group
2

Unit IDs

8WHX|1|a|C|1296
8WHX|1|a|U|1297
8WHX|1|a|G|1298
8WHX|1|a|C|1299
8WHX|1|a|A|1300
8WHX|1|a|A|1301
8WHX|1|a|C|1302
8WHX|1|a|U|1303
8WHX|1|a|C|1304
8WHX|1|a|G|1305

Current chains

Chain a
16S rRNA

Nearby chains

Chain n
30S ribosomal protein S13
Chain o
30S ribosomal protein S14A
Chain t
30S ribosomal protein S19

Coloring options:


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