HL_8WI7_011

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UUGGGAUG

Length

8 nucleotides

Bulged bases

8WI7|1|A|U|393

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WI7_011 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1752

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

8WI7|1|A|U|387
8WI7|1|A|U|388
8WI7|1|A|G|389
8WI7|1|A|G|390
8WI7|1|A|G|391
8WI7|1|A|A|392
8WI7|1|A|U|393
8WI7|1|A|G|394

Current chains

Chain A

23S rRNA

Nearby chains

Chain X

50S ribosomal protein L24