HL_8WI7_030

3D structure

PDB id

8WI7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GAAACAGC

Length

8 nucleotides

Bulged bases

8WI7|1|A|A|1098

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WI7_030 not in the Motif Atlas

Homologous match to HL_4WF9_028

Geometric discrepancy: 0.1287

The information below is about HL_4WF9_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47171.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

10

Unit IDs

8WI7|1|A|G|1096
8WI7|1|A|A|1097
8WI7|1|A|A|1098
8WI7|1|A|A|1099
8WI7|1|A|C|1100
8WI7|1|A|A|1101
8WI7|1|A|G|1102
8WI7|1|A|C|1103

Current chains

Chain A

23S rRNA

Nearby chains

Chain 3

50S ribosomal protein L30

Chain T

50S ribosomal protein L20