HL_8WI9_003

3D structure

PDB id

8WI9 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGAAAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WI9_003 not in the Motif Atlas

Homologous match to HL_4LFB_003

Geometric discrepancy: 0.1104

The information below is about HL_4LFB_003

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

8WI9|1|a|G|155
8WI9|1|a|G|156
8WI9|1|a|A|157
8WI9|1|a|A|158
8WI9|1|a|A|159
8WI9|1|a|C|160

Current chains

Chain a

16S rRNA

Nearby chains

Chain u

30S ribosomal protein S20