HL_8WI9_029
3D structure
- PDB id
- 8WI9 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo- EM structure of Mycobacterium smegmatis 30S ribosomal subunit (body 2) of 70S ribosome, bS1 and RafH.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- CUGCAACUCG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8WI9_029 not in the Motif Atlas
- Homologous match to HL_4LFB_029
- Geometric discrepancy: 0.1314
- The information below is about HL_4LFB_029
- Detailed Annotation
- T-loop with 3 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_93658.1
- Basepair signature
- cWW-tWH-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
8WI9|1|a|C|1296
8WI9|1|a|U|1297
8WI9|1|a|G|1298
8WI9|1|a|C|1299
8WI9|1|a|A|1300
8WI9|1|a|A|1301
8WI9|1|a|C|1302
8WI9|1|a|U|1303
8WI9|1|a|C|1304
8WI9|1|a|G|1305
Current chains
- Chain a
- 16S rRNA
Nearby chains
- Chain n
- 30S ribosomal protein S13
- Chain o
- 30S ribosomal protein S14A
- Chain t
- 30S ribosomal protein S19
- Chain x
- 50S ribosomal protein L31
Coloring options: