HL_8WIB_004

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

AGUGAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIB_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2029

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

8WIB|1|A|A|134
8WIB|1|A|G|135
8WIB|1|A|U|136
8WIB|1|A|G|137
8WIB|1|A|A|138
8WIB|1|A|U|139
8WIB|1|A|G|140
8WIB|1|A|U|141

Current chains

Chain A

23S rRNA

Nearby chains

Chain W

50S ribosomal protein L23