HL_8WIB_038

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCGCUGCA

Length

8 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIB_038 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.201

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

8WIB|1|A|U|1560
8WIB|1|A|C|1561
8WIB|1|A|G|1606
8WIB|1|A|C|1607
8WIB|1|A|U|1608
8WIB|1|A|G|1609
8WIB|1|A|C|1610
8WIB|1|A|A|1611

Current chains

Chain A

23S rRNA

Nearby chains

Chain g

30S ribosomal protein S6