HL_8WIB_043

3D structure

PDB id

8WIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAACACAG

Length

8 nucleotides

Bulged bases

8WIB|1|A|A|1832, 8WIB|1|A|A|1834, 8WIB|1|A|A|1836

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIB_043 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1127

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

8WIB|1|A|C|1830
8WIB|1|A|A|1831
8WIB|1|A|A|1832
8WIB|1|A|C|1833
8WIB|1|A|A|1834
8WIB|1|A|C|1835
8WIB|1|A|A|1836
8WIB|1|A|G|1837

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain V

50S ribosomal protein L22