HL_8WIC_015

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GGACCACC

Length

8 nucleotides

Bulged bases

8WIC|1|A|G|499

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_015 not in the Motif Atlas

Homologous match to HL_5J7L_146

Geometric discrepancy: 0.0996

The information below is about HL_5J7L_146

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.3

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8WIC|1|A|G|498
8WIC|1|A|G|499
8WIC|1|A|A|500
8WIC|1|A|C|501
8WIC|1|A|C|502
8WIC|1|A|A|503
8WIC|1|A|C|504
8WIC|1|A|C|505

Current chains

Chain A

23S rRNA

Nearby chains

Chain O

50S ribosomal protein L15