HL_8WIC_020

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGGGUG

Length

6 nucleotides

Bulged bases

8WIC|1|A|G|707

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_020 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.2942

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

8WIC|1|A|C|705
8WIC|1|A|G|706
8WIC|1|A|G|707
8WIC|1|A|G|708
8WIC|1|A|U|709
8WIC|1|A|G|710

Current chains

Chain A

23S rRNA

Nearby chains

Chain G

50S ribosomal protein L4