HL_8WIC_034

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

GUGAGAACC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_034 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1148

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8WIC|1|A|G|1396
8WIC|1|A|U|1397
8WIC|1|A|G|1398
8WIC|1|A|A|1399
8WIC|1|A|G|1400
8WIC|1|A|A|1401
8WIC|1|A|A|1402
8WIC|1|A|C|1403
8WIC|1|A|C|1404

Current chains

Chain A

23S rRNA

Nearby chains

Chain 5

50S ribosomal protein L32

Chain Q

50S ribosomal protein L17

Chain V

50S ribosomal protein L22