3D structure

PDB id
8WIC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
UCAGUGGUAAUA
Length
12 nucleotides
Bulged bases
8WIC|1|A|G|1674, 8WIC|1|A|U|1675, 8WIC|1|A|U|1681
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8WIC_039 not in the Motif Atlas
Homologous match to HL_7A0S_036
Geometric discrepancy: 0.5887
The information below is about HL_7A0S_036
Detailed Annotation
Pseudoknot
Broad Annotation
No text annotation
Motif group
HL_93135.1
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
1

Unit IDs

8WIC|1|A|U|1671
8WIC|1|A|C|1672
8WIC|1|A|A|1673
8WIC|1|A|G|1674
8WIC|1|A|U|1675
8WIC|1|A|G|1676
8WIC|1|A|G|1677
8WIC|1|A|U|1678
8WIC|1|A|A|1679
8WIC|1|A|A|1680
8WIC|1|A|U|1681
8WIC|1|A|A|1682

Current chains

Chain A
23S rRNA

Nearby chains

Chain Q
50S ribosomal protein L17

Coloring options:


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