HL_8WIC_039

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

UCAGUGGUAAUA

Length

12 nucleotides

Bulged bases

8WIC|1|A|G|1674, 8WIC|1|A|U|1675, 8WIC|1|A|U|1681

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_039 not in the Motif Atlas

Homologous match to HL_7A0S_036

Geometric discrepancy: 0.5887

The information below is about HL_7A0S_036

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_93135.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

1

Unit IDs

8WIC|1|A|U|1671
8WIC|1|A|C|1672
8WIC|1|A|A|1673
8WIC|1|A|G|1674
8WIC|1|A|U|1675
8WIC|1|A|G|1676
8WIC|1|A|G|1677
8WIC|1|A|U|1678
8WIC|1|A|A|1679
8WIC|1|A|A|1680
8WIC|1|A|U|1681
8WIC|1|A|A|1682

Current chains

Chain A

23S rRNA

Nearby chains

Chain Q

50S ribosomal protein L17