HL_8WIC_056

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8WIC|1|A|G|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_056 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.2158

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8WIC|1|A|C|2472
8WIC|1|A|U|2473
8WIC|1|A|G|2474
8WIC|1|A|G|2475
8WIC|1|A|G|2476
8WIC|1|A|G|2477
8WIC|1|A|C|2478
8WIC|1|A|G|2479
8WIC|1|A|G|2480

Current chains

Chain A

23S rRNA

Nearby chains

Chain Z

50S ribosomal protein L27