HL_8WIC_061

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_061 not in the Motif Atlas

Homologous match to HL_7RQB_058

Geometric discrepancy: 0.0987

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

8WIC|1|A|C|2598
8WIC|1|A|G|2599
8WIC|1|A|A|2600
8WIC|1|A|A|2601
8WIC|1|A|A|2602
8WIC|1|A|G|2603

Current chains

Chain A

23S rRNA

Nearby chains

Chain 6

50S ribosomal protein L33A

Chain R

50S ribosomal protein L18