3D structure

PDB id
8WIC (explore in PDB, NAKB, or RNA 3D Hub)
Description
Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.
Experimental method
ELECTRON MICROSCOPY
Resolution
3.5 Å

Loop

Sequence
GCAGACCAC
Length
9 nucleotides
Bulged bases
8WIC|1|A|C|3041
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8WIC_071 not in the Motif Atlas
Homologous match to HL_5J7L_201
Geometric discrepancy: 0.1062
The information below is about HL_5J7L_201
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_64690.6
Basepair signature
cWW-cSW-F-F-F-F
Number of instances in this motif group
9

Unit IDs

8WIC|1|A|G|3040
8WIC|1|A|C|3041
8WIC|1|A|A|3042
8WIC|1|A|G|3043
8WIC|1|A|A|3044
8WIC|1|A|C|3045
8WIC|1|A|C|3046
8WIC|1|A|A|3047
8WIC|1|A|C|3048

Current chains

Chain A
23S rRNA

Nearby chains

Chain F
50S ribosomal protein L3
Chain Q
50S ribosomal protein L17

Coloring options:


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