HL_8WIC_075

3D structure

PDB id

8WIC (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo- EM structure of Mycobacterium smegmatis 50S ribosomal subunit (body 1) of 70S ribosome, E- tRNA and RafH.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAGCCGGUAG

Length

10 nucleotides

Bulged bases

8WIC|1|C|C|16, 8WIC|1|C|C|17, 8WIC|1|C|G|18, 8WIC|1|C|G|19, 8WIC|1|C|U|20

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8WIC_075 not in the Motif Atlas

Homologous match to HL_4LCK_001

Geometric discrepancy: 0.2154

The information below is about HL_4LCK_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8WIC|1|C|C|13
8WIC|1|C|A|14
8WIC|1|C|G|15
8WIC|1|C|C|16
8WIC|1|C|C|17
8WIC|1|C|G|18
8WIC|1|C|G|19
8WIC|1|C|U|20
8WIC|1|C|A|21
8WIC|1|C|G|22

Current chains

Chain C

E-tRNA

Nearby chains

Chain A

Large subunit ribosomal RNA; LSU rRNA